Cooccurrence

The Cooccurrence module builds a cooccurrence network where each node is a MAG and every edge represents an association between them. The network can be inferred based on correlation or inverse covariance estimation by SPIEC-EASI. SPIEC-EASI is executed multiple times based on different parameter settings in order to find the most stable network. In addition, it is possible to compute multiple metrics for every edge based on genome-scale metabolic models and the SMETANA metrics.

-entry wCooccurrence -params-file example_params/cooccurrence.yml

Input

CommandConfiguration File for CooccurrenceTSV TableGTDB TSV TableConfiguration File for analyzing edges in Cooccurrence GraphGTDB TSV for analyzing EdgesModel TSV for computing Metabolomics Metrics on Edges

-entry wCooccurrence -params-file example_params/cooccurrence.yml

Warning

The configuration file shown here is for demonstration and testing purposes only. Parameters that should be used in production can be viewed in the cooccurrence section of one of the yaml files located in the default folder of the Toolkit's Github repository.

tempdir: "tmp"
summary: false
s3SignIn: false
output: "output"
runid: 1
logLevel: 1
logDir: log
scratch: "/vol/scratch"
publishDirMode: "symlink"
steps:
  cooccurrence:
    input:
      gtdb: test_data/cooccurrence/gtdb.tsv
      count: test_data/cooccurrence/counts.tsv 
    inference:
       additionalParams: 
         method: 'correlation'
         rscript: " --mincovthreshold 0.1 --maxzero 110 --minweight 0.4 "
         timeLimit: "AUTO"

resources:
  highmemLarge:
    cpus: 28
    memory: 230
  highmemMedium:
    cpus: 14
    memory: 113
  large:
    cpus: 28
    memory: 58
  medium:
    cpus: 14
    memory: 29
  small:
    cpus: 7
    memory: 14
  tiny:
    cpus: 1
    memory: 1

SAMPLE  READS
test1   https://openstack.cebitec.uni-bielefeld.de:8080/swift/v1/meta_test/small/interleaved.fq.gz

Contains abundance values of mags per sample.

BIN_ID  DOMAIN  SAMPLE  user_genome classification  fastani_reference   fastani_reference_radius    fastani_taxonomy    fastani_ani fastani_af  closest_placement_reference closest_placement_radius    closest_placement_taxonomy  closest_placement_ani   closest_placement_af    pplacer_taxonomy    classification_method   note    other_related_references(genome_id,species_name,radius,ANI,AF)  msa_percent translation_table   red_value   warnings
test1_bin.1.fa  BACTERIA    test2   test2_bin.1.fa  d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Phycicoccus;s__Phycicoccus sp001428065   GCF_001428065.1 95.0    d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Phycicoccus;s__Phycicoccus sp001428065   99.77   0.99    GCF_001428065.1 95.0    d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Phycicoccus;s__Phycicoccus sp001428065   99.77   0.99    d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Phycicoccus;s__  taxonomic classification defined by topology and ANI    topological placement and ANI have congruent species assignments    GCF_002846495.1, s__Phycicoccus duodecadis, 95.0, 90.33, 0.95; GCF_011383005.1, s__Phycicoccus sp011383005, 95.0, 82.92, 0.85; GCF_000720925.1, s__Phycicoccus jejuensis, 95.0, 82.49, 0.82; GCF_013201035.1, s__Phycicoccus sp013201035, 95.0, 82.18, 0.84; GCF_004025965.2, s__Phycicoccus sp004025965, 95.0, 81.96, 0.78; GCF_011326735.1, s__Phycicoccus endophyticus, 95.0, 81.12, 0.7 12.73   11  N/A N/A
test2_bin.2.fa  BACTERIA    test2   test2_bin.2.fa  d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Schwartzia;s__Schwartzia succinivorans   GCF_900129225.1 95.0    d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Schwartzia;s__Schwartzia succinivorans   99.97   1.0 GCF_900129225.1 95.0    d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Schwartzia;s__Schwartzia succinivorans   99.97   1.0 d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__;s__ taxonomic classification defined by topology and ANI    topological placement and ANI have congruent species assignments    N/A 91.94   11  N/A N/A

GTDB assignment of all samples that were produced by magAttributes module.

Warning

The configuration file shown here is for demonstration and testing purposes only. Parameters that should be used in production can be viewed in the cooccurrence section of one of the yaml files located in the default folder of the Toolkit's Github repository.

tempdir: "/tmp"
summary: false
s3SignIn: false
output: "output"
runid: 1
logLevel: 0
logDir: log
scratch: "/vol/scratch"
publishDirMode: "symlink"
steps:
  cooccurrence:
     input:
       gtdb: test_data/cooccurrence/gtdb_large.tsv
       count: test_data/cooccurrence/countsMedium.tsv
       models: test_data/cooccurrence/models.tsv
     inference:
        additionalParams:
          method: 'spiec-easi'
          rscript: " --mincovthreshold 0.1 --maxzero 110"
          timeLimit: "AUTO"
     metabolicAnnotation:
       additionalParams:
         metabolicEdgeBatches: 5
         metabolicEdgeReplicates: 10
         smetana: " --flavor bigg "

resources:
  highmemLarge:
    cpus: 28
    memory: 230
  highmemMedium:
    cpus: 14
    memory: 113
  large:
    cpus: 28
    memory: 58
  medium:
    cpus: 14
    memory: 29
  small:
    cpus: 7
    memory: 14
  tiny:
    cpus: 1
    memory: 1

DOMAIN  PHYLUM  CLASS   ORDER   FAMILY  GENUS   SPECIES BIN_ID
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Moraxellaceae    g__Acinetobacter    s__ ERR2592244_bin.1
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Neisseriaceae    g__Neisseria    s__Neisseria suis   ERR2592244_bin.10
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Formosimonas s__ ERR2592244_bin.11
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Formosimonas s__ ERR2592244_bin.12
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__JAGOEY01 s__ ERR2592244_bin.15
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Moraxellaceae    g__Acinetobacter    s__ ERR2592244_bin.16
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Acidovorax   s__Acidovorax defluvii  ERR2592244_bin.17
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Acidovorax   s__ ERR2592244_bin.18
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Flavobacteriales f__Flavobacteriaceae    g__Flavobacterium   s__ ERR2592244_bin.2
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Pseudomonadaceae g__Pseudomonas_E    s__ ERR2592244_bin.20
d__Bacteria p__Campylobacterota c__Campylobacteria  o__Campylobacterales    f__Arcobacteraceae  g__Aliarcobacter    s__Aliarcobacter cryaerophilus_A    ERR2592244_bin.23
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Pseudomonadaceae g__Pseudomonas_E    s__Pseudomonas_E paracarnis ERR2592244_bin.25
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Formosimonas s__ ERR2592244_bin.26
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Flavobacteriales f__Weeksellaceae    g__Kaistella    s__Kaistella chaponensis    ERR2592244_bin.27
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Formosimonas s__ ERR2592244_bin.28
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Moraxellaceae    g__Acinetobacter    s__Acinetobacter celticus   ERR2592244_bin.29
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Veillonellales   f__Dialisteraceae   g__Dialister    s__Dialister invisus    ERR2592244_bin.3
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Moraxellaceae    g__Psychrobacter    s__Psychrobacter faecalis   ERR2592244_bin.32
d__Bacteria p__Firmicutes   c__Bacilli  o__Lactobacillales  f__Aerococcaceae    g__Trichococcus s__Trichococcus flocculiformis  ERR2592244_bin.33
d__Bacteria p__Firmicutes   c__Bacilli  o__Lactobacillales  f__Streptococcaceae g__Lactococcus_A    s__Lactococcus_A raffinolactis  ERR2592244_bin.34
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Moraxellaceae    g__Acinetobacter    s__Acinetobacter johnsonii  ERR2592244_bin.36
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Formosimonas s__ ERR2592244_bin.37
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Diaphorobacter_A s__ ERR2592244_bin.38
d__Bacteria p__Fusobacteriota   c__Fusobacteriia    o__Fusobacteriales  f__Leptotrichiaceae g__JAGOYM01 s__JAGOYM01 sp018059165 ERR2592244_bin.4
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Veillonellales   f__Dialisteraceae   g__Dialister    s__Dialister sp000434475    ERR2592244_bin.40
d__Bacteria p__Actinobacteriota c__Actinomycetia    o__Actinomycetales  f__Micrococcaceae   g__Galactobacter    s__ ERR2592244_bin.41
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Veillonellales   f__Dialisteraceae   g__Dialister    s__Dialister invisus    ERR2592244_bin.5
d__Bacteria p__Fusobacteriota   c__Fusobacteriia    o__Fusobacteriales  f__Leptotrichiaceae g__JAGOYM01 s__ ERR2592244_bin.6
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Flavobacteriales f__Weeksellaceae    g__Kaistella    s__ ERR2592244_bin.7
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Veillonellales   f__Dialisteraceae   g__Dialister    s__Dialister invisus    ERR2592244_bin.8
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Ottowia  s__Ottowia sp018060485  ERR2592244_bin.9
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Flavobacteriales f__Weeksellaceae    g__Epilithonimonas  s__Epilithonimonas vandammei    ERR2592245_bin.11
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Flavobacteriales f__Weeksellaceae    g__Empedobacter s__Empedobacter falsenii_A  ERR2592245_bin.12
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Moraxellaceae    g__Acinetobacter    s__Acinetobacter parvus ERR2592245_bin.13
d__Bacteria p__Campylobacterota c__Campylobacteria  o__Campylobacterales    f__Arcobacteraceae  g__Aliarcobacter    s__ ERR2592245_bin.14
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Flavobacteriales f__Weeksellaceae    g__Cloacibacterium  s__ ERR2592245_bin.15
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Ottowia  s__Ottowia beijingensis ERR2592245_bin.16
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Moraxellaceae    g__Acinetobacter    s__Acinetobacter harbinensis    ERR2592245_bin.17
d__Bacteria p__Firmicutes   c__Bacilli  o__Lactobacillales  f__Streptococcaceae g__Streptococcus    s__Streptococcus parasuis   ERR2592245_bin.18
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__CTSOIL-112   s__ ERR2592245_bin.19
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Acidovorax   s__Acidovorax temperans ERR2592245_bin.2
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Neisseriaceae    g__26B  s__26B sp016894345  ERR2592245_bin.20
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Moraxellaceae    g__Acinetobacter    s__Acinetobacter johnsonii  ERR2592245_bin.21
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Moraxellaceae    g__Acinetobacter    s__Acinetobacter harbinensis    ERR2592245_bin.22
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Neisseriaceae    g__Neisseria    s__Neisseria suis   ERR2592245_bin.23
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Comamonas    s__Comamonas denitrificans_A    ERR2592245_bin.26
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Moraxellaceae    g__Acinetobacter    s__Acinetobacter guillouiae ERR2592245_bin.27
d__Bacteria p__Fusobacteriota   c__Fusobacteriia    o__Fusobacteriales  f__Leptotrichiaceae g__JAGOYM01 s__JAGOYM01 sp018059165 ERR2592245_bin.28
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Sphaerotilus s__Sphaerotilus sulfidivorans   ERR2592245_bin.29
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Moraxellaceae    g__Psychrobacter    s__ ERR2592245_bin.3
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Moraxellaceae    g__Psychrobacter    s__ ERR2592245_bin.30
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Acidovorax   s__Acidovorax defluvii  ERR2592245_bin.4
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Brachymonas  s__ ERR2592245_bin.5
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Moraxellaceae    g__Moraxella_A  s__Moraxella_A sp002478835  ERR2592245_bin.6
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Neisseriaceae    g__Vitreoscilla s__ ERR2592245_bin.8
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Flavobacteriales f__Flavobacteriaceae    g__Flavobacterium   s__Flavobacterium sp017997335   ERR2592245_bin.9
d__Bacteria p__Verrucomicrobiota    c__Kiritimatiellae  o__LD1-PB3  f__Lenti-01 g__Lenti-01 s__ ERR2592249_bin.10
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Brachymonas  s__ ERR2592249_bin.11
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Ottowia  s__Ottowia beijingensis ERR2592249_bin.12
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__CTSOIL-112   s__ ERR2592249_bin.13
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Acidaminococcales    f__Acidaminococcaceae   g__RZYP01   s__ ERR2592249_bin.14
d__Bacteria p__Chloroflexota    c__Anaerolineae o__Promineofilales  f__Promineofilaceae g__Promineofilum    s__ ERR2592249_bin.15
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Acidovorax   s__Acidovorax temperans ERR2592249_bin.16
d__Bacteria p__Firmicutes_C c__Negativicutes    o__UBA1444  f__UBA1444  g__UBA1444  s__ ERR2592249_bin.18
d__Bacteria p__Desulfobacterota c__Desulfobulbia    o__Desulfobulbales  f__Desulfobulbaceae g__Desulfobulbus    s__Desulfobulbus sp017998195    ERR2592249_bin.19
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Selenomonadales  f__Selenomonadaceae g__ s__ ERR2592249_bin.20
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__ s__ ERR2592249_bin.21
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Brachymonas  s__Brachymonas sp017996515  ERR2592249_bin.22
d__Bacteria p__Firmicutes_A c__Clostridia   o__Peptostreptococcales f__Filifactoraceae  g__Acetoanaerobium  s__Acetoanaerobium noterae  ERR2592249_bin.23
d__Bacteria p__Desulfobacterota c__Desulfobulbia    o__Desulfobulbales  f__Desulfobulbaceae g__Desulfobulbus    s__ ERR2592249_bin.25
d__Bacteria p__Desulfobacterota c__Desulfobulbia    o__Desulfobulbales  f__Desulfobulbaceae g__Desulfobulbus    s__ ERR2592249_bin.27
d__Bacteria p__Fusobacteriota   c__Fusobacteriia    o__Fusobacteriales  f__Leptotrichiaceae g__JAGOWQ01 s__ ERR2592249_bin.28
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Neisseriaceae    g__Neisseria    s__ ERR2592249_bin.29
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Neisseriaceae    g__Neisseria    s__Neisseria suis   ERR2592249_bin.3
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Moraxellaceae    g__Acinetobacter    s__Acinetobacter towneri    ERR2592249_bin.30
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Enterobacterales f__Pasteurellaceae  g__Mesocricetibacter    s__ ERR2592249_bin.31
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Selenomonadales  f__JAGPMH01 g__JAGPMH01 s__JAGPMH01 sp018052945 ERR2592249_bin.33
d__Bacteria p__Planctomycetota  c__Planctomycetia   o__Pirellulales f__PNKZ01   g__ s__ ERR2592249_bin.34
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Rhodocyclaceae   g__Propionivibrio   s__ ERR2592249_bin.36
d__Bacteria p__Patescibacteria  c__Microgenomatia   o__UBA1406  f__ g__ s__ ERR2592249_bin.37
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Brachymonas  s__Brachymonas sp018054915  ERR2592249_bin.38
d__Bacteria p__Acidobacteriota  c__Aminicenantia    o__ f__ g__ s__ ERR2592249_bin.39
d__Bacteria p__Actinobacteriota c__Acidimicrobiia   o__Acidimicrobiales f__JAEUJM01 g__ s__ ERR2592249_bin.4
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Enterobacterales f__Enterobacteriaceae   g__Klebsiella   s__Klebsiella pneumoniae    ERR2592249_bin.6
d__Bacteria p__Firmicutes   c__Bacilli  o__Lactobacillales  f__Streptococcaceae g__Streptococcus    s__ ERR2592249_bin.7
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Moraxellaceae    g__Moraxella    s__ ERR2592249_bin.8
d__Bacteria p__Patescibacteria  c__JAEDAM01 o__BD1-5    f__UBA2023  g__UBA5532  s__ ERR2592251_bin.1
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Flavobacteriales f__Flavobacteriaceae    g__Flavobacterium   s__ ERR2592251_bin.10
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Chitinophagales  f__Chitinophagaceae g__Niabella s__ ERR2592251_bin.11
d__Bacteria p__Firmicutes   c__Bacilli  o__Lactobacillales  f__Aerococcaceae    g__Trichococcus s__Trichococcus flocculiformis  ERR2592251_bin.12
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Moraxellaceae    g__Psychrobacter    s__Psychrobacter maritimus  ERR2592251_bin.13
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Xanthomonadales  f__Xanthomonadaceae g__Thermomonas  s__ ERR2592251_bin.14
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Veillonellales   f__Dialisteraceae   g__Dialister    s__Dialister invisus    ERR2592251_bin.16
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Ottowia  s__Ottowia sp018060485  ERR2592251_bin.17
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__ s__ ERR2592251_bin.18
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Veillonellales   f__Dialisteraceae   g__Dialister    s__Dialister invisus    ERR2592251_bin.19
d__Bacteria p__Campylobacterota c__Campylobacteria  o__Campylobacterales    f__Arcobacteraceae  g__Aliarcobacter    s__Aliarcobacter acticola   ERR2592251_bin.2
d__Bacteria p__Firmicutes_A c__Clostridia   o__Oscillospirales  f__Acutalibacteraceae   g__Fimenecus    s__Fimenecus sp000432435    ERR2592251_bin.20
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Xanthomonadales  f__Xanthomonadaceae g__Thermomonas  s__ ERR2592251_bin.3
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Acidovorax   s__Acidovorax defluvii  ERR2592251_bin.4
d__Bacteria p__Firmicutes_A c__Clostridia   o__Lachnospirales   f__Lachnospiraceae  g__Agathobacter s__Agathobacter rectalis    ERR2592251_bin.6
d__Bacteria p__Fusobacteriota   c__Fusobacteriia    o__Fusobacteriales  f__Leptotrichiaceae g__JAGOYM01 s__JAGOYM01 sp018059165 ERR2592251_bin.7
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Moraxellaceae    g__Acinetobacter    s__ ERR2592251_bin.8
d__Bacteria p__Firmicutes   c__Bacilli  o__Lactobacillales  f__Streptococcaceae g__Lactococcus_A    s__Lactococcus_A raffinolactis  ERR2592251_bin.9
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Comamonas    s__Comamonas denitrificans_A    ERR2592252_bin.1
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Brachymonas  s__ ERR2592252_bin.11
d__Bacteria p__Fusobacteriota   c__Fusobacteriia    o__Fusobacteriales  f__Leptotrichiaceae g__Leptotrichia_A   s__ ERR2592252_bin.12
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Acidaminococcales    f__Acidaminococcaceae   g__RZYP01   s__ ERR2592252_bin.13
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Moraxellaceae    g__Moraxella_A  s__ ERR2592252_bin.14
d__Bacteria p__Actinobacteriota c__Actinomycetia    o__Propionibacteriales  f__Propionibacteriaceae g__Brooklawnia  s__ ERR2592252_bin.15
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__JAABTG01 f__JAABTG01 g__JAGNLM01 s__ ERR2592252_bin.16
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Neisseriaceae    g__Neisseria    s__ ERR2592252_bin.17
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Moraxellaceae    g__Acinetobacter    s__Acinetobacter towneri    ERR2592252_bin.18
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Veillonellales   f__Veillonellaceae  g__Veillonella  s__Veillonella sp009929605  ERR2592252_bin.19
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Acidaminococcales    f__Acidaminococcaceae   g__RZYP01   s__ ERR2592252_bin.2
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Neisseriaceae    g__Neisseria    s__Neisseria suis   ERR2592252_bin.20
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Rhodocyclaceae   g__ s__ ERR2592252_bin.21
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Acidovorax   s__Acidovorax temperans ERR2592252_bin.22
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Moraxellaceae    g__Moraxella    s__Moraxella porci  ERR2592252_bin.23
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Brachymonas  s__Brachymonas sp012729605  ERR2592252_bin.24
d__Bacteria p__Desulfobacterota c__Desulfobulbia    o__Desulfobulbales  f__Desulfobulbaceae g__Desulfobulbus    s__Desulfobulbus sp017998195    ERR2592252_bin.25
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Enterobacterales f__Pasteurellaceae  g__Actinobacillus   s__ ERR2592252_bin.26
d__Bacteria p__Verrucomicrobiota    c__Kiritimatiellae  o__RFP12    f__UBA3636  g__JAAZAI01 s__JAAZAI01 sp012514445 ERR2592252_bin.27
d__Bacteria p__Acidobacteriota  c__Aminicenantia    o__ f__ g__ s__ ERR2592252_bin.28
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Moraxellaceae    g__Moraxella_A  s__Moraxella_A sp002478835  ERR2592252_bin.29
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__CTSOIL-112   s__ ERR2592252_bin.3
d__Bacteria p__Chloroflexota    c__Anaerolineae o__Anaerolineales   f__Anaerolineaceae  g__T78  s__ ERR2592252_bin.30
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Brachymonas  s__ ERR2592252_bin.31
d__Bacteria p__Firmicutes   c__Bacilli  o__Lactobacillales  f__Streptococcaceae g__Streptococcus    s__ ERR2592252_bin.32
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Brachymonas  s__Brachymonas sp018054915  ERR2592252_bin.33
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Ottowia  s__Ottowia beijingensis ERR2592252_bin.34
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Moraxellaceae    g__Moraxella    s__ ERR2592252_bin.35
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Sphaerotilus s__Sphaerotilus sulfidivorans   ERR2592252_bin.36
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Selenomonadales  f__Selenomonadaceae g__ s__ ERR2592252_bin.37
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Brachymonas  s__ ERR2592252_bin.38
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Diaphorobacter   s__ ERR2592252_bin.40
d__Bacteria p__Firmicutes   c__Bacilli  o__Lactobacillales  f__Streptococcaceae g__Streptococcus    s__Streptococcus parasuis   ERR2592252_bin.41
d__Bacteria p__Synergistota c__Synergistia  o__Synergistales    f__Synergistaceae   g__Syner-03 s__Syner-03 sp002316795 ERR2592252_bin.42
d__Bacteria p__Campylobacterota c__Campylobacteria  o__Campylobacterales    f__Arcobacteraceae  g__Aliarcobacter    s__Aliarcobacter cryaerophilus_A    ERR2592252_bin.43
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Neisseriaceae    g__Neisseria    s__ ERR2592252_bin.44
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Brachymonas  s__Brachymonas chironomi    ERR2592252_bin.45
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Brachymonas  s__Brachymonas denitrificans    ERR2592252_bin.47
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Xanthomonadales  f__Xanthomonadaceae g__Pseudoxanthomonas    s__ ERR2592252_bin.49
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Brachymonas  s__Brachymonas sp017993135  ERR2592252_bin.5
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Neisseriaceae    g__Neisseria    s__ ERR2592252_bin.50
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Moraxellaceae    g__Moraxella    s__ ERR2592252_bin.51
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Rhodocyclaceae   g__Azonexus s__Azonexus sp012839675 ERR2592252_bin.52
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Flavobacteriales f__Weeksellaceae    g__Cloacibacterium  s__ ERR2592252_bin.53
d__Bacteria p__Patescibacteria  c__Saccharimonadia  o__Saccharimonadales    f__Nanogingivalaceae    g__Nanogingivalis   s__ ERR2592252_bin.54
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Bacteroidales    f__Paludibacteraceae    g__UPXZ01   s__UPXZ01 sp009929445   ERR2592252_bin.55
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Enterobacterales f__Pasteurellaceae  g__Mesocricetibacter    s__ ERR2592252_bin.6
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Flavobacteriales f__Weeksellaceae    g__Cloacibacterium  s__ ERR2592252_bin.7
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Xanthomonadales  f__Xanthomonadaceae g__Pseudoxanthomonas_A  s__ ERR2592252_bin.8
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Selenomonadales  f__JAGPMH01 g__JAGPMH01 s__JAGPMH01 sp018052945 ERR2592252_bin.9
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Flavobacteriales f__Weeksellaceae    g__Cloacibacterium  s__ ERR2592253_bin.1
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Veillonellales   f__Dialisteraceae   g__Dialister    s__Dialister invisus    ERR2592253_bin.10
d__Bacteria p__Campylobacterota c__Campylobacteria  o__Campylobacterales    f__Arcobacteraceae  g__Aliarcobacter    s__ ERR2592253_bin.11
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Flavobacteriales f__Weeksellaceae    g__Kaistella    s__ ERR2592253_bin.12
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Neisseriaceae    g__Neisseria    s__ ERR2592253_bin.13
d__Bacteria p__Fusobacteriota   c__Fusobacteriia    o__Fusobacteriales  f__Leptotrichiaceae g__JAGOYM01 s__JAGOYM01 sp018059165 ERR2592253_bin.14
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__JAAFJR01 s__JAAFJR01 sp016705065 ERR2592253_bin.15
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Moraxellaceae    g__Moraxella_A  s__Moraxella_A sp002478835  ERR2592253_bin.16
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Flavobacteriales f__UJ101    g__UJ101    s__ ERR2592253_bin.17
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Veillonellales   f__Dialisteraceae   g__Dialister    s__Dialister invisus    ERR2592253_bin.18
d__Bacteria p__Firmicutes   c__Bacilli  o__Lactobacillales  f__Aerococcaceae    g__Trichococcus s__Trichococcus flocculiformis  ERR2592253_bin.19
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Acidovorax   s__Acidovorax defluvii  ERR2592253_bin.2
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Moraxellaceae    g__Acinetobacter    s__ ERR2592253_bin.20
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Comamonas    s__Comamonas denitrificans_A    ERR2592253_bin.21
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Bacteroidales    f__DTU049   g__DTU049   s__DTU049 sp001513285   ERR2592253_bin.22
d__Bacteria p__Actinobacteriota c__Actinomycetia    o__Actinomycetales  f__Dermatophilaceae g__Phycicoccus_A    s__Phycicoccus_A elongatus  ERR2592253_bin.23
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Flavobacteriales f__Flavobacteriaceae    g__Flavobacterium   s__ ERR2592253_bin.24
d__Bacteria p__Campylobacterota c__Campylobacteria  o__Campylobacterales    f__Arcobacteraceae  g__Aliarcobacter    s__Aliarcobacter sp017996075    ERR2592253_bin.25
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Flavobacteriales f__Weeksellaceae    g__Cloacibacterium  s__ ERR2592253_bin.27
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Flavobacteriales f__Weeksellaceae    g__Kaistella    s__ ERR2592253_bin.29
d__Bacteria p__Firmicutes   c__Bacilli  o__Lactobacillales  f__Streptococcaceae g__Lactococcus_A    s__Lactococcus_A raffinolactis  ERR2592253_bin.3
d__Bacteria p__Actinobacteriota c__Actinomycetia    o__Actinomycetales  f__Cellulomonadaceae    g__Timonella    s__ ERR2592253_bin.30
d__Bacteria p__Firmicutes_A c__Clostridia   o__Oscillospirales  f__Acutalibacteraceae   g__Fimenecus    s__Fimenecus sp000432435    ERR2592253_bin.31
d__Bacteria p__Actinobacteriota c__Actinomycetia    o__Actinomycetales  f__Dermatophilaceae g__Phycicoccus_A    s__ ERR2592253_bin.33
d__Bacteria p__Coprothermobacterota c__Coprothermobacteria  o__Coprothermobacterales    f__Coprothermobacteraceae   g__Coprothermobacter    s__Coprothermobacter proteolyticus  ERR2592253_bin.35
d__Bacteria p__Firmicutes_C c__Negativicutes    o__JAGOZY01 f__JAGOZY01 g__JAGOHU01 s__JAGOHU01 sp017995975 ERR2592253_bin.37
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Flavobacteriales f__Weeksellaceae    g__Empedobacter s__ ERR2592253_bin.38
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Neisseriaceae    g__Neisseria    s__Neisseria suis   ERR2592253_bin.39
d__Bacteria p__Fusobacteriota   c__Fusobacteriia    o__Fusobacteriales  f__Leptotrichiaceae g__Sebaldella   s__ ERR2592253_bin.4
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__CTSOIL-112   s__CTSOIL-112 sp017986195   ERR2592253_bin.40
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Moraxellaceae    g__Acinetobacter    s__Acinetobacter sp009707625    ERR2592253_bin.5
d__Bacteria p__Campylobacterota c__Campylobacteria  o__Campylobacterales    f__Sulfurospirillaceae  g__Sulfurospirillum s__ ERR2592253_bin.6
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__JAGOEY01 s__JAGOEY01 sp017997515 ERR2592253_bin.7
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Ottowia  s__Ottowia sp018060485  ERR2592253_bin.8
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Brachymonas  s__Brachymonas sp017993135  ERR2592253_bin.9
d__Bacteria p__Firmicutes   c__Bacilli  o__Lactobacillales  f__Lactobacillaceae g__Lactobacillus    s__Lactobacillus delbrueckii    ERR2592258_bin.1
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Brachymonas  s__Brachymonas sp018054915  ERR2592258_bin.11
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Bacteroidales    f__Bacteroidaceae   g__Prevotella   s__Prevotella sp015074785   ERR2592258_bin.12
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Veillonellales   f__Dialisteraceae   g__Dialister    s__Dialister succinatiphilus    ERR2592258_bin.13
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Enterobacterales f__Aeromonadaceae   g__JAGOXX01 s__ ERR2592258_bin.16
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Acidaminococcales    f__Acidaminococcaceae   g__RZYP01   s__ ERR2592258_bin.17
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Enterobacterales f__Aeromonadaceae   g__JAGOXX01 s__ ERR2592258_bin.18
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Veillonellales   f__Veillonellaceae  g__Veillonella_A    s__Veillonella_A sp900765165    ERR2592258_bin.19
d__Bacteria p__Firmicutes_A c__Clostridia   o__Lachnospirales   f__Lachnospiraceae  g__Butyrivibrio s__ ERR2592258_bin.2
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Veillonellales   f__Veillonellaceae  g__Veillonella  s__Veillonella sp009929605  ERR2592258_bin.21
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Enterobacterales f__Succinivibrionaceae  g__Succinivibrio    s__Succinivibrio sp000431835    ERR2592258_bin.22
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Enterobacterales f__Aeromonadaceae   g__Tolumonas    s__Tolumonas sp008015085    ERR2592258_bin.23
d__Bacteria p__Actinobacteriota c__Coriobacteriia   o__Coriobacteriales f__Atopobiaceae g__Olsenella_D  s__Olsenella_D sp002331575  ERR2592258_bin.25
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Selenomonadales  f__Selenomonadaceae g__ s__ ERR2592258_bin.26
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__CTSOIL-112   s__ ERR2592258_bin.27
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Enterobacterales f__Enterobacteriaceae   g__Escherichia  s__Escherichia coli ERR2592258_bin.28
d__Bacteria p__Campylobacterota c__Campylobacteria  o__Campylobacterales    f__Sulfurospirillaceae  g__Sulfurospirillum s__Sulfurospirillum sp001548035 ERR2592258_bin.29
d__Bacteria p__Firmicutes   c__Bacilli  o__Lactobacillales  f__Streptococcaceae g__Lactococcus  s__Lactococcus lactis   ERR2592258_bin.3
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Anaeromusales    f__Anaeromusaceae   g__Anaeromusa   s__ ERR2592258_bin.30
d__Bacteria p__Desulfobacterota_I   c__Desulfovibrionia o__Desulfovibrionales   f__Desulfovibrionaceae  g__Desulfovibrio    s__ ERR2592258_bin.31
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Bacteroidales    f__Bacteroidaceae   g__Prevotella   s__Prevotella copri_A   ERR2592258_bin.32
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Enterobacterales f__Enterobacteriaceae   g__Klebsiella   s__Klebsiella pneumoniae    ERR2592258_bin.33
d__Bacteria p__Firmicutes_A c__Clostridia   o__Lachnospirales   f__Lachnospiraceae  g__Agathobacter s__Agathobacter rectalis    ERR2592258_bin.34
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Selenomonadales  f__Selenomonadaceae g__Megamonas    s__Megamonas funiformis ERR2592258_bin.35
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Flavobacteriales f__Weeksellaceae    g__Cloacibacterium  s__ ERR2592258_bin.36
d__Bacteria p__Actinobacteriota c__Actinomycetia    o__Actinomycetales  f__Bifidobacteriaceae   g__Bifidobacterium  s__Bifidobacterium thermophilum ERR2592258_bin.37
d__Bacteria p__Patescibacteria  c__Saccharimonadia  o__Saccharimonadales    f__Nanosyncoccaceae g__UBA2834  s__ ERR2592258_bin.38
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Selenomonadales  f__Selenomonadaceae g__Mitsuokella  s__Mitsuokella multacida    ERR2592258_bin.39
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Bacteroidales    f__UBA932   g__Egerieousia  s__ ERR2592258_bin.4
d__Bacteria p__Actinobacteriota c__Actinomycetia    o__Actinomycetales  f__Bifidobacteriaceae   g__Bifidobacterium  s__Bifidobacterium adolescentis ERR2592258_bin.40
d__Bacteria p__Actinobacteriota c__Actinomycetia    o__Actinomycetales  f__Bifidobacteriaceae   g__Bifidobacterium  s__Bifidobacterium longum   ERR2592258_bin.42
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Bacteroidales    f__Tannerellaceae   g__Macellibacteroides   s__ ERR2592258_bin.43
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Bacteroidales    f__Bacteroidaceae   g__Prevotella   s__ ERR2592258_bin.44
d__Bacteria p__Fusobacteriota   c__Fusobacteriia    o__Fusobacteriales  f__ g__ s__ ERR2592258_bin.45
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Bacteroidales    f__Rikenellaceae    g__Alistipes    s__Alistipes putredinis ERR2592258_bin.46
d__Bacteria p__Actinobacteriota c__Actinomycetia    o__Actinomycetales  f__Bifidobacteriaceae   g__Bifidobacterium  s__Bifidobacterium sp002742445  ERR2592258_bin.47
d__Bacteria p__Campylobacterota c__Campylobacteria  o__Campylobacterales    f__Arcobacteraceae  g__Aliarcobacter    s__Aliarcobacter cryaerophilus_A    ERR2592258_bin.48
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Bacteroidales    f__Bacteroidaceae   g__Prevotella   s__Prevotella sp018054505   ERR2592258_bin.5
d__Bacteria p__Acidobacteriota  c__Aminicenantia    o__ f__ g__ s__ ERR2592258_bin.50
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Bacteroidales    f__Paludibacteraceae    g__ s__ ERR2592258_bin.51
d__Bacteria p__Acidobacteriota  c__Mor1 o__J045 f__J045 g__JAGOJY01 s__ ERR2592258_bin.52
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Veillonellales   f__Dialisteraceae   g__Dialister    s__Dialister hominis    ERR2592258_bin.54
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Selenomonadales  f__Selenomonadaceae g__ s__ ERR2592258_bin.55
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Selenomonadales  f__JAGPMH01 g__JAGPMH01 s__JAGPMH01 sp018052945 ERR2592258_bin.56
d__Bacteria p__Campylobacterota c__Campylobacteria  o__Campylobacterales    f__Arcobacteraceae  g__Aliarcobacter    s__ ERR2592258_bin.57
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Selenomonadales  f__Selenomonadaceae g__Selenomonas_A    s__Selenomonas_A sp018052705    ERR2592258_bin.58
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Veillonellales   f__Dialisteraceae   g__Dialister    s__Dialister hominis    ERR2592258_bin.6
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Veillonellales   f__Dialisteraceae   g__Dialister    s__Dialister hominis    ERR2592258_bin.7
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Bacteroidales    f__UBA932   g__Egerieousia  s__ ERR2592258_bin.8
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Selenomonadales  f__Selenomonadaceae g__ s__ ERR2592258_bin.9
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Acidovorax   s__Acidovorax defluvii  ERR2592260_bin.1
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Hydromonas   s__ ERR2592260_bin.11
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__UBA2334  s__ ERR2592260_bin.12
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Moraxellaceae    g__Acinetobacter    s__Acinetobacter sp003987695    ERR2592260_bin.13
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Sphaerotilus s__Sphaerotilus montanus    ERR2592260_bin.14
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Flavobacteriales f__Flavobacteriaceae    g__Flavobacterium   s__Flavobacterium sp017997335   ERR2592260_bin.15
d__Bacteria p__Fusobacteriota   c__Fusobacteriia    o__Fusobacteriales  f__Leptotrichiaceae g__JAGOYM01 s__JAGOYM01 sp018059165 ERR2592260_bin.16
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Acidovorax   s__Acidovorax temperans ERR2592260_bin.17
d__Bacteria p__Firmicutes   c__Bacilli  o__Lactobacillales  f__Aerococcaceae    g__Trichococcus s__Trichococcus flocculiformis  ERR2592260_bin.19
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__JAGOEY01 s__ ERR2592260_bin.2
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Flavobacteriales f__Flavobacteriaceae    g__Flavobacterium   s__Flavobacterium sp017995345   ERR2592260_bin.20
d__Bacteria p__Firmicutes   c__Bacilli  o__Lactobacillales  f__Streptococcaceae g__Lactococcus_A    s__Lactococcus_A raffinolactis  ERR2592260_bin.21
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Giesbergeria s__ ERR2592260_bin.23
d__Bacteria p__Firmicutes   c__Bacilli  o__Lactobacillales  f__Aerococcaceae    g__Trichococcus s__Trichococcus flocculiformis  ERR2592260_bin.24
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Sphaerotilus s__Sphaerotilus sulfidivorans   ERR2592260_bin.25
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Sphaerotilus s__Sphaerotilus sulfidivorans   ERR2592260_bin.26
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Moraxellaceae    g__Acinetobacter    s__Acinetobacter parvus ERR2592260_bin.3
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Flavobacteriales f__Weeksellaceae    g__Cloacibacterium  s__ ERR2592260_bin.4
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Flavobacteriales f__Weeksellaceae    g__Kaistella    s__Kaistella chaponensis    ERR2592260_bin.7
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Flavobacteriales f__Weeksellaceae    g__Cloacibacterium  s__Cloacibacterium caeni_A  ERR2592260_bin.8
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Moraxellaceae    g__Moraxella_A  s__Moraxella_A sp002478835  ERR2592260_bin.9
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Neisseriaceae    g__Neisseria    s__Neisseria suis   ERR2592262_bin.1
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Flavobacteriales f__Weeksellaceae    g__Cloacibacterium  s__Cloacibacterium caeni_A  ERR2592262_bin.3
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Ottowia  s__Ottowia sp018060485  ERR2592262_bin.4
d__Bacteria p__Firmicutes   c__Bacilli  o__Lactobacillales  f__Aerococcaceae    g__Trichococcus s__Trichococcus flocculiformis  ERR2592262_bin.5
d__Bacteria p__Fusobacteriota   c__Fusobacteriia    o__Fusobacteriales  f__Leptotrichiaceae g__JAGOYM01 s__JAGOYM01 sp018059165 ERR2592262_bin.6
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Brachymonas  s__Brachymonas sp018054915  ERR2592264_bin.1
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Thiotrichales    f__Thiotrichaceae   g__ s__ ERR2592264_bin.10
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Xanthomonadales  f__Xanthomonadaceae g__Pseudoxanthomonas_A  s__ ERR2592264_bin.12
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Selenomonadales  f__JAGPMH01 g__JAGPMH01 s__JAGPMH01 sp018052945 ERR2592264_bin.13
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__CTSOIL-112   s__ ERR2592264_bin.14
d__Bacteria p__Firmicutes_A c__Clostridia   o__Lachnospirales   f__Lachnospiraceae  g__Agathobacter s__Agathobacter rectalis    ERR2592264_bin.15
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Thiotrichales    f__Thiotrichaceae   g__ s__ ERR2592264_bin.16
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Veillonellales   f__Dialisteraceae   g__Dialister    s__Dialister hominis    ERR2592264_bin.17
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Enterobacterales f__Enterobacteriaceae   g__Escherichia  s__Escherichia coli ERR2592264_bin.18
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Neisseriaceae    g__Neisseria    s__ ERR2592264_bin.19
d__Bacteria p__Firmicutes   c__Bacilli  o__Lactobacillales  f__Streptococcaceae g__Streptococcus    s__ ERR2592264_bin.2
d__Bacteria p__Actinobacteriota c__Actinomycetia    o__Actinomycetales  f__Bifidobacteriaceae   g__Bifidobacterium  s__Bifidobacterium adolescentis ERR2592264_bin.20
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Enterobacterales f__Enterobacteriaceae   g__Klebsiella   s__Klebsiella pneumoniae    ERR2592264_bin.21
d__Bacteria p__Firmicutes   c__Bacilli  o__Erysipelotrichales   f__Coprobacillaceae g__Catenibacterium  s__Catenibacterium sp000437715  ERR2592264_bin.22
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Moraxellaceae    g__Acinetobacter    s__Acinetobacter parvus ERR2592264_bin.24
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Sphaerotilus s__Sphaerotilus sulfidivorans   ERR2592264_bin.25
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Flavobacteriales f__Weeksellaceae    g__Cloacibacterium  s__ ERR2592264_bin.26
d__Bacteria p__Campylobacterota c__Campylobacteria  o__Campylobacterales    f__Arcobacteraceae  g__Aliarcobacter    s__Aliarcobacter cryaerophilus_A    ERR2592264_bin.27
d__Bacteria p__Firmicutes_A c__Clostridia   o__Oscillospirales  f__Acutalibacteraceae   g__Fimenecus    s__Fimenecus sp000432435    ERR2592264_bin.28
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Veillonellales   f__Dialisteraceae   g__Dialister    s__Dialister hominis    ERR2592264_bin.29
d__Bacteria p__Firmicutes_A c__Clostridia   o__Lachnospirales   f__Lachnospiraceae  g__Blautia_A    s__Blautia_A wexlerae   ERR2592264_bin.30
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Ottowia  s__ ERR2592264_bin.31
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Flavobacteriales f__Weeksellaceae    g__Epilithonimonas  s__ ERR2592264_bin.32
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Selenomonadales  f__Selenomonadaceae g__Megamonas    s__Megamonas funiformis ERR2592264_bin.5
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Selenomonadales  f__Selenomonadaceae g__Megamonas    s__Megamonas funiformis ERR2592264_bin.7
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Thiotrichales    f__Thiotrichaceae   g__ s__ ERR2592264_bin.8
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Veillonellales   f__Dialisteraceae   g__Dialister    s__Dialister hominis    ERR2592264_bin.9
d__Bacteria p__Desulfobacterota c__Syntrophia   o__Syntrophales f__UBA5619  g__UBA5619  s__ ERR2592265_bin.1
d__Bacteria p__Desulfobacterota c__Syntrophia   o__Syntrophales f__Fen-1087 g__Fen-1087 s__ ERR2592265_bin.10
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__JAABTG01 f__JAABTG01 g__JAGNLM01 s__ ERR2592265_bin.11
d__Bacteria p__Synergistota c__Synergistia  o__Synergistales    f__Synergistaceae   g__Syner-03 s__Syner-03 sp002316795 ERR2592265_bin.13
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Veillonellales   f__Dialisteraceae   g__Dialister    s__Dialister invisus    ERR2592265_bin.14
d__Bacteria p__Firmicutes_C c__Negativicutes    o__UBA1444  f__UBA1444  g__UBA1444  s__ ERR2592265_bin.15
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Ottowia  s__Ottowia sp018060485  ERR2592265_bin.16
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Brachymonas  s__Brachymonas sp012729605  ERR2592265_bin.17
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Neisseriaceae    g__Neisseria    s__Neisseria suis   ERR2592265_bin.18
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Veillonellales   f__Dialisteraceae   g__Dialister    s__Dialister hominis    ERR2592265_bin.19
d__Bacteria p__UBA1439  c__UBA1439  o__UBA1439  f__UBA1439  g__UBA1439  s__UBA1439 sp002329605  ERR2592265_bin.20
d__Bacteria p__Firmicutes_A c__Clostridia   o__Lachnospirales   f__Lachnospiraceae  g__Eisenbergiella   s__Eisenbergiella sp900066775   ERR2592265_bin.21
d__Bacteria p__Firmicutes_A c__Clostridia   o__Lachnospirales   f__Lachnospiraceae  g__Agathobacter s__Agathobacter rectalis    ERR2592265_bin.22
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Brachymonas  s__Brachymonas denitrificans    ERR2592265_bin.23
d__Bacteria p__Firmicutes_A c__Clostridia   o__Oscillospirales  f__Ruminococcaceae  g__Gemmiger s__Gemmiger qucibialis  ERR2592265_bin.24
d__Bacteria p__Verrucomicrobiota    c__Verrucomicrobiae o__Verrucomicrobiales   f__SLCJ01   g__ s__ ERR2592265_bin.25
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Xanthomonadales  f__Xanthomonadaceae g__Pseudoxanthomonas    s__Pseudoxanthomonas sp018060215    ERR2592265_bin.26
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__CTSOIL-112   s__ ERR2592265_bin.27
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Brachymonas  s__Brachymonas chironomi    ERR2592265_bin.28
d__Bacteria p__Actinobacteriota c__Actinomycetia    o__Actinomycetales  f__Bifidobacteriaceae   g__Bifidobacterium  s__Bifidobacterium adolescentis ERR2592265_bin.29
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Veillonellales   f__Dialisteraceae   g__Dialister    s__Dialister hominis    ERR2592265_bin.3
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Enterobacterales f__Enterobacteriaceae   g__Escherichia  s__Escherichia coli ERR2592265_bin.30
d__Bacteria p__Verrucomicrobiota    c__Kiritimatiellae  o__LD1-PB3  f__Lenti-01 g__Lenti-01 s__ ERR2592265_bin.4
d__Bacteria p__Verrucomicrobiota    c__Verrucomicrobiae o__Verrucomicrobiales   f__Akkermansiaceae  g__Akkermansia  s__Akkermansia muciniphila  ERR2592265_bin.5
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Veillonellales   f__Dialisteraceae   g__Dialister    s__Dialister invisus    ERR2592265_bin.6
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Ottowia  s__Ottowia beijingensis ERR2592265_bin.8
d__Bacteria p__Desulfobacterota c__Desulfobulbia    o__Desulfobulbales  f__Desulfobulbaceae g__Desulfobulbus    s__Desulfobulbus sp017998195    ERR2592265_bin.9
d__Bacteria p__Firmicutes_A c__Clostridia   o__Lachnospirales   f__Lachnospiraceae  g__Agathobacter s__Agathobacter rectalis    ERR2592268_bin.1
d__Bacteria p__Firmicutes_E c__DTU015   o__D8A-2    f__D2   g__UBA3907  s__UBA3907 sp018052475  ERR2592268_bin.10
d__Bacteria p__Synergistota c__Synergistia  o__Synergistales    f__Synergistaceae   g__Syner-03 s__Syner-03 sp002306075 ERR2592268_bin.12
d__Bacteria p__Synergistota c__Synergistia  o__Synergistales    f__Synergistaceae   g__ s__ ERR2592268_bin.13
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Bacteroidales    f__Paludibacteraceae    g__UPXZ01   s__ ERR2592268_bin.14
d__Bacteria p__Patescibacteria  c__Dojkabacteria    o__B142 f__OLB20    g__ s__ ERR2592268_bin.15
d__Bacteria p__Firmicutes_A c__Clostridia   o__Oscillospirales  f__Acutalibacteraceae   g__Fimenecus    s__Fimenecus sp000432435    ERR2592268_bin.16
d__Bacteria p__Verrucomicrobiota    c__Verrucomicrobiae o__Verrucomicrobiales   f__Akkermansiaceae  g__Akkermansia  s__Akkermansia muciniphila  ERR2592268_bin.19
d__Bacteria p__Desulfobacterota c__Desulfobulbia    o__Desulfobulbales  f__Desulfobulbaceae g__Desulfobulbus    s__ ERR2592268_bin.2
d__Bacteria p__Patescibacteria  c__Saccharimonadia  o__Saccharimonadales    f__JAGPDM01 g__JAGPDM01 s__ ERR2592268_bin.20
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Xanthomonadales  f__Xanthomonadaceae g__Pseudoxanthomonas_A  s__ ERR2592268_bin.21
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Selenomonadales  f__JAGPMH01 g__JAGPMH01 s__JAGPMH01 sp018052945 ERR2592268_bin.23
d__Bacteria p__Actinobacteriota c__Acidimicrobiia   o__Acidimicrobiales f__Microtrichaceae  g__Microthrix   s__ ERR2592268_bin.25
d__Bacteria p__Firmicutes_A c__Clostridia   o__Oscillospirales  f__Acutalibacteraceae   g__Fimenecus    s__Fimenecus sp000432435    ERR2592268_bin.26
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Flavobacteriales f__Weeksellaceae    g__Cloacibacterium  s__Cloacibacterium caeni_A  ERR2592268_bin.27
d__Bacteria p__Firmicutes_A c__Clostridia   o__Tissierellales   f__Peptoniphilaceae g__JAAYEL01 s__ ERR2592268_bin.28
d__Bacteria p__Campylobacterota c__Campylobacteria  o__Campylobacterales    f__Arcobacteraceae  g__Aliarcobacter    s__ ERR2592268_bin.29
d__Bacteria p__Actinobacteriota c__Actinomycetia    o__Actinomycetales  f__Bifidobacteriaceae   g__Bifidobacterium  s__Bifidobacterium adolescentis ERR2592268_bin.3
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Bacteroidales    f__Dysgonomonadaceae    g__UBA5287  s__ ERR2592268_bin.30
d__Bacteria p__Firmicutes_A c__Clostridia   o__Peptostreptococcales f__Filifactoraceae  g__Proteocatella    s__Proteocatella sp009929415    ERR2592268_bin.31
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Bacteroidales    f__Paludibacteraceae    g__UPXZ01   s__ ERR2592268_bin.32
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Acidaminococcales    f__Acidaminococcaceae   g__ s__ ERR2592268_bin.33
d__Bacteria p__Firmicutes_A c__Clostridia   o__Lachnospirales   f__Lachnospiraceae  g__JAGOGN01 s__ ERR2592268_bin.34
d__Bacteria p__Firmicutes_A c__Clostridia   o__Oscillospirales  f__Ruminococcaceae  g__Gemmiger s__Gemmiger qucibialis  ERR2592268_bin.35
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Moraxellaceae    g__Psychrobacter    s__Psychrobacter faecalis   ERR2592268_bin.36
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Veillonellales   f__Dialisteraceae   g__Dialister    s__Dialister invisus    ERR2592268_bin.37
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Bacteroidales    f__UBA4417  g__UBA4417  s__ ERR2592268_bin.38
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Comamonas    s__Comamonas denitrificans_A    ERR2592268_bin.39
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Ottowia  s__Ottowia sp018060485  ERR2592268_bin.40
d__Bacteria p__Patescibacteria  c__ABY1 o__BM507    f__UBA917   g__UBA1359  s__ ERR2592268_bin.41
d__Bacteria p__Firmicutes   c__Bacilli  o__Lactobacillales  f__Enterococcaceae  g__Enterococcus_I   s__Enterococcus_I aquimarinus   ERR2592268_bin.42
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Brachymonas  s__Brachymonas sp017993135  ERR2592268_bin.43
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Veillonellales   f__Dialisteraceae   g__Dialister    s__Dialister invisus    ERR2592268_bin.44
d__Bacteria p__Firmicutes   c__Bacilli  o__Lactobacillales  f__Aerococcaceae    g__Trichococcus s__Trichococcus flocculiformis  ERR2592268_bin.45
d__Bacteria p__Patescibacteria  c__Dojkabacteria    o__SC72 f__SC72 g__ s__ ERR2592268_bin.46
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Acidovorax   s__Acidovorax defluvii  ERR2592268_bin.47
d__Bacteria p__Patescibacteria  c__Paceibacteria    o__UBA6257  f__ g__ s__ ERR2592268_bin.48
d__Bacteria p__Patescibacteria  c__Saccharimonadia  o__Saccharimonadales    f__UBA7683  g__ s__ ERR2592268_bin.49
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Neisseriaceae    g__Neisseria    s__Neisseria suis   ERR2592268_bin.5
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Moraxellaceae    g__Acinetobacter    s__Acinetobacter johnsonii  ERR2592268_bin.50
d__Bacteria p__Fusobacteriota   c__Fusobacteriia    o__Fusobacteriales  f__Leptotrichiaceae g__JAGOYM01 s__JAGOYM01 sp018059165 ERR2592268_bin.6
d__Bacteria p__Firmicutes_A c__Clostridia   o__Peptostreptococcales f__Filifactoraceae  g__Proteocatella    s__ ERR2592268_bin.7
d__Bacteria p__Firmicutes_A c__Clostridia   o__Tissierellales   f__Peptoniphilaceae g__JAAYEL01 s__ ERR2592268_bin.8
d__Bacteria p__Firmicutes   c__Bacilli  o__Lactobacillales  f__Streptococcaceae g__Lactococcus_A    s__Lactococcus_A raffinolactis  ERR2592268_bin.9
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__CTSOIL-112   s__ ERR2592269_bin.10
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Neisseriaceae    g__Neisseria    s__ ERR2592269_bin.11
d__Bacteria p__Caldisericota    c__Caldisericia o__Caldisericales   f__Caldisericaceae  g__ s__ ERR2592269_bin.12
d__Bacteria p__Chloroflexota    c__Anaerolineae o__Anaerolineales   f__Anaerolineaceae  g__ s__ ERR2592269_bin.13
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Enterobacterales f__Pasteurellaceae  g__Glaesserella s__ ERR2592269_bin.14
d__Bacteria p__Desulfobacterota c__Syntrophia   o__Syntrophales f__UBA5619  g__UBA5619  s__ ERR2592269_bin.16
d__Bacteria p__Verrucomicrobiota    c__Kiritimatiellae  o__LD1-PB3  f__Lenti-01 g__Lenti-01 s__ ERR2592269_bin.17
d__Bacteria p__Bacteroidota c__Ignavibacteria   o__SJA-28   f__B-1AR    g__CAIKZJ01 s__ ERR2592269_bin.18
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Bacteroidales    f__VadinHA17    g__SR-FBR-E99   s__SR-FBR-E99 sp018262715   ERR2592269_bin.19
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Flavobacteriales f__Weeksellaceae    g__Cloacibacterium  s__ ERR2592269_bin.2
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__CTSOIL-112   s__ ERR2592269_bin.20
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Enterobacterales f__Enterobacteriaceae   g__Klebsiella   s__Klebsiella quasipneumoniae   ERR2592269_bin.22
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__JAABTG01 f__JAABTG01 g__JAGNLM01 s__ ERR2592269_bin.23
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Xanthomonadales  f__Rhodanobacteraceae   g__ s__ ERR2592269_bin.24
d__Bacteria p__Desulfobacterota c__Syntrophia   o__Syntrophales f__Fen-1087 g__Fen-1087 s__ ERR2592269_bin.25
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Xanthomonadales  f__Xanthomonadaceae g__Thermomonas  s__ ERR2592269_bin.26
d__Bacteria p__Firmicutes   c__Bacilli  o__Lactobacillales  f__Streptococcaceae g__Streptococcus    s__ ERR2592269_bin.28
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Casimicrobiaceae g__VBCG01   s__ ERR2592269_bin.29
d__Bacteria p__UBA1439  c__UBA1439  o__UBA1439  f__UBA1439  g__UBA1439  s__UBA1439 sp002329605  ERR2592269_bin.3
d__Bacteria p__Spirochaetota    c__JAAYUW01 o__JAAYUW01 f__JAAYUW01 g__Exilispira   s__ ERR2592269_bin.30
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Neisseriaceae    g__Neisseria    s__ ERR2592269_bin.32
d__Bacteria p__Desulfobacterota c__Syntrophia   o__Syntrophales f__Smithellaceae    g__UBA8904  s__UBA8904 sp002070455  ERR2592269_bin.35
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Brachymonas  s__Brachymonas sp018054915  ERR2592269_bin.4
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Moraxellaceae    g__Acinetobacter    s__Acinetobacter harbinensis    ERR2592269_bin.5
d__Bacteria p__Firmicutes   c__Bacilli  o__Lactobacillales  f__Streptococcaceae g__Streptococcus    s__ ERR2592269_bin.7
d__Bacteria p__Firmicutes_A c__Clostridia   o__Tissierellales   f__Sedimentibacteraceae g__Sedimentibacter  s__Sedimentibacter sp017995755  ERR2592269_bin.8
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Moraxellaceae    g__Acinetobacter    s__Acinetobacter parvus ERR2592269_bin.9
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Flavobacteriales f__Flavobacteriaceae    g__Flavobacterium   s__Flavobacterium sp017997335   ERR2592273_bin.1
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Moraxellaceae    g__Acinetobacter    s__Acinetobacter pullicarnis    ERR2592273_bin.10
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Moraxellaceae    g__Acinetobacter    s__ ERR2592273_bin.12
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Pseudomonadaceae g__Pseudomonas_E    s__ ERR2592273_bin.13
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Moraxellaceae    g__Acinetobacter    s__Acinetobacter harbinensis    ERR2592273_bin.14
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Acidovorax   s__Acidovorax defluvii  ERR2592273_bin.15
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Flavobacteriales f__Flavobacteriaceae    g__Flavobacterium   s__ ERR2592273_bin.16
d__Bacteria p__Campylobacterota c__Campylobacteria  o__Campylobacterales    f__Arcobacteraceae  g__Aliarcobacter    s__Aliarcobacter acticola   ERR2592273_bin.17
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Moraxellaceae    g__Acinetobacter    s__ ERR2592273_bin.19
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Comamonas    s__ ERR2592273_bin.2
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Moraxellaceae    g__Acinetobacter    s__Acinetobacter celticus   ERR2592273_bin.20
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Flavobacteriales f__Flavobacteriaceae    g__Flavobacterium   s__ ERR2592273_bin.21
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Flavobacteriales f__Flavobacteriaceae    g__Flavobacterium   s__ ERR2592273_bin.22
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Pseudomonadaceae g__Pseudomonas_E    s__ ERR2592273_bin.26
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Flavobacteriales f__Flavobacteriaceae    g__Flavobacterium   s__ ERR2592273_bin.27
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Evansiales   f__ g__ s__ ERR2592273_bin.28
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Flavobacteriales f__Flavobacteriaceae    g__Flavobacterium   s__ ERR2592273_bin.3
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Flavobacteriales f__Weeksellaceae    g__Bergeyella_A s__ ERR2592273_bin.4
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Comamonas    s__ ERR2592273_bin.5
d__Bacteria p__Actinobacteriota c__Actinomycetia    o__Actinomycetales  f__Microbacteriaceae    g__ s__ ERR2592273_bin.6
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Flavobacteriales f__Flavobacteriaceae    g__Flavobacterium   s__Flavobacterium sp017989775   ERR2592273_bin.7
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Flavobacteriales f__Weeksellaceae    g__Kaistella    s__Kaistella chaponensis    ERR2592273_bin.8
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Moraxellaceae    g__Psychrobacter    s__Psychrobacter faecalis   ERR2592273_bin.9
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Ottowia  s__ ERR2592274_bin.1
d__Bacteria p__Actinobacteriota c__Actinomycetia    o__Mycobacteriales  f__Mycobacteriaceae g__Rhodococcus  s__Rhodococcus qingshengii  ERR2592274_bin.11
d__Bacteria p__Actinobacteriota c__Actinomycetia    o__Actinomycetales  f__Dermatophilaceae g__Ornithinibacter  s__Ornithinibacter sp017989115  ERR2592274_bin.12
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Formosimonas s__ ERR2592274_bin.13
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Acidovorax   s__Acidovorax defluvii  ERR2592274_bin.14
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Acidovorax   s__Acidovorax temperans ERR2592274_bin.15
d__Bacteria p__Firmicutes   c__Bacilli  o__Lactobacillales  f__Streptococcaceae g__Lactococcus_A    s__Lactococcus_A raffinolactis  ERR2592274_bin.16
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__JAGOEY01 s__ ERR2592274_bin.17
d__Bacteria p__Fusobacteriota   c__Fusobacteriia    o__Fusobacteriales  f__Leptotrichiaceae g__JAGOYM01 s__JAGOYM01 sp018059165 ERR2592274_bin.18
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Moraxellaceae    g__Moraxella_A  s__Moraxella_A sp002478835  ERR2592274_bin.19
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Moraxellaceae    g__Acinetobacter    s__ ERR2592274_bin.2
d__Bacteria p__Chloroflexota    c__Anaerolineae o__Anaerolineales   f__Anaerolineaceae  g__Brevefilum   s__Brevefilum fermentans    ERR2592274_bin.20
d__Bacteria p__Firmicutes_A c__Clostridia   o__Oscillospirales  f__Ruminococcaceae  g__Faecalibacterium s__Faecalibacterium prausnitzii_G   ERR2592274_bin.21
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Flavobacteriales f__Weeksellaceae    g__Kaistella    s__Kaistella chaponensis    ERR2592274_bin.22
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Flavobacteriales f__Flavobacteriaceae    g__Flavobacterium   s__Flavobacterium sp017997335   ERR2592274_bin.23
d__Bacteria p__Firmicutes   c__Bacilli  o__Lactobacillales  f__Aerococcaceae    g__Trichococcus s__Trichococcus flocculiformis  ERR2592274_bin.25
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Veillonellales   f__Dialisteraceae   g__Dialister    s__ ERR2592274_bin.26
d__Bacteria p__Firmicutes_A c__Clostridia   o__TANB77   f__CAG-508  g__CAG-273  s__ ERR2592274_bin.27
d__Bacteria p__Firmicutes_A c__Clostridia   o__Oscillospirales  f__Acutalibacteraceae   g__Ruminococcus_E   s__Ruminococcus_E sp003526955   ERR2592274_bin.3
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Veillonellales   f__Dialisteraceae   g__Dialister    s__Dialister invisus    ERR2592274_bin.4
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Hydromonas   s__ ERR2592274_bin.5
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Moraxellaceae    g__Acinetobacter    s__ ERR2592274_bin.6
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Veillonellales   f__Dialisteraceae   g__Dialister    s__Dialister invisus    ERR2592274_bin.9
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Veillonellales   f__Dialisteraceae   g__Dialister    s__ ERR2592276_bin.1
d__Bacteria p__Firmicutes   c__Bacilli  o__Lactobacillales  f__Streptococcaceae g__Streptococcus    s__Streptococcus parasuis   ERR2592276_bin.10
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Neisseriaceae    g__Neisseria    s__Neisseria suis   ERR2592276_bin.11
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Brachymonas  s__ ERR2592276_bin.12
d__Bacteria p__Fusobacteriota   c__Fusobacteriia    o__Fusobacteriales  f__Leptotrichiaceae g__Sebaldella   s__Sebaldella termitidis    ERR2592276_bin.13
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Comamonas    s__Comamonas denitrificans_A    ERR2592276_bin.14
d__Bacteria p__Firmicutes_A c__Clostridia   o__Oscillospirales  f__Ruminococcaceae  g__Gemmiger s__Gemmiger qucibialis  ERR2592276_bin.16
d__Bacteria p__Fusobacteriota   c__Fusobacteriia    o__Fusobacteriales  f__Leptotrichiaceae g__JAGOYM01 s__ ERR2592276_bin.17
d__Bacteria p__Firmicutes_A c__Clostridia   o__Peptostreptococcales f__Filifactoraceae  g__Proteocatella    s__Proteocatella sp009929415    ERR2592276_bin.18
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Neisseriaceae    g__Neisseria    s__ ERR2592276_bin.19
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Acidovorax   s__Acidovorax temperans ERR2592276_bin.2
d__Bacteria p__Firmicutes_A c__Clostridia   o__Lachnospirales   f__Lachnospiraceae  g__Agathobacter s__Agathobacter rectalis    ERR2592276_bin.20
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Enterobacterales f__Pasteurellaceae  g__Chelonobacter    s__ ERR2592276_bin.21
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Veillonellales   f__Dialisteraceae   g__Dialister    s__Dialister invisus    ERR2592276_bin.22
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Pseudomonadales  f__Moraxellaceae    g__Moraxella    s__ ERR2592276_bin.23
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Brachymonas  s__Brachymonas sp017996515  ERR2592276_bin.24
d__Bacteria p__Bacteroidota c__Bacteroidia  o__Flavobacteriales f__Weeksellaceae    g__Cloacibacterium  s__Cloacibacterium caeni_A  ERR2592276_bin.27
d__Bacteria p__Campylobacterota c__Campylobacteria  o__Campylobacterales    f__Arcobacteraceae  g__Aliarcobacter    s__Aliarcobacter cryaerophilus_A    ERR2592276_bin.28
d__Bacteria p__Firmicutes_A c__Clostridia   o__Lachnospirales   f__Lachnospiraceae  g__Blautia_A    s__Blautia_A wexlerae   ERR2592276_bin.29
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Burkholderiaceae g__Ottowia  s__Ottowia beijingensis ERR2592276_bin.3
d__Bacteria p__Firmicutes_C c__Negativicutes    o__Selenomonadales  f__JAGPMH01 g__JAGPMH01 s__JAGPMH01 sp018052945 ERR2592276_bin.30
d__Bacteria p__Firmicutes_A c__Clostridia   o__Lachnospirales   f__Lachnospiraceae  g__Eisenbergiella   s__Eisenbergiella sp900066775   ERR2592276_bin.31
d__Bacteria p__Firmicutes_A c__Clostridia   o__Oscillospirales  f__Ruminococcaceae  g__Faecalibacterium s__Faecalibacterium prausnitzii_C   ERR2592276_bin.4
d__Bacteria p__Proteobacteria   c__Gammaproteobacteria  o__Burkholderiales  f__Neisseriaceae    g__Neisseria    s__ ERR2592276_bin.5
d__Bacteria p__Firmicutes   c__Bacilli  o__Lactobacillales  f__Streptococcaceae g__Streptococcus    s__ ERR2592276_bin.6
d__Bacteria p__Fusobacteriota   c__Fusobacteriia    o__Fusobacteriales  f__Leptotrichiaceae g__JAGOYM01 s__ ERR2592276_bin.7
d__Bacteria p__Firmicutes_A c__Clostridia   o__Peptostreptococcales f__Filifactoraceae  g__Acetoanaerobium  s__Acetoanaerobium noterae  ERR2592276_bin.8
d__Bacteria p__Desulfobacterota c__Desulfobulbia    o__Desulfobulbales  f__Desulfobulbaceae g__Desulfobulbus    s__ ERR2592276_bin.9

GTDB assignment of all samples that were produced by the magAttributes module.

BIN_ID  PATH
ERR2592244_bin.27   https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592244_bin.27.fa.xml
ERR2592244_bin.33   https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592244_bin.33.fa.xml
ERR2592245_bin.18   https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592245_bin.18.fa.xml
ERR2592249_bin.19   https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592249_bin.19.fa.xml
ERR2592249_bin.25   https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592249_bin.25.fa.xml
ERR2592249_bin.27   https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592249_bin.27.fa.xml
ERR2592249_bin.29   https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592249_bin.29.fa.xml
ERR2592249_bin.31   https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592249_bin.31.fa.xml
ERR2592249_bin.38   https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592249_bin.38.fa.xml
ERR2592251_bin.11   https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592251_bin.11.fa.xml
ERR2592251_bin.12   https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592251_bin.12.fa.xml
ERR2592251_bin.13   https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592251_bin.13.fa.xml
ERR2592252_bin.11   https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592252_bin.11.fa.xml
ERR2592252_bin.16   https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592252_bin.16.fa.xml
ERR2592252_bin.19   https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592252_bin.19.fa.xml
ERR2592252_bin.25   https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592252_bin.25.fa.xml
ERR2592252_bin.35   https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592252_bin.35.fa.xml
ERR2592252_bin.44   https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592252_bin.44.fa.xml
ERR2592252_bin.5    https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592252_bin.5.fa.xml
ERR2592252_bin.6    https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592252_bin.6.fa.xml
ERR2592253_bin.11   https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592253_bin.11.fa.xml
ERR2592253_bin.13   https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592253_bin.13.fa.xml
ERR2592253_bin.23   https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592253_bin.23.fa.xml
ERR2592253_bin.35   https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592253_bin.35.fa.xml
ERR2592253_bin.37   https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592253_bin.37.fa.xml
ERR2592253_bin.4    https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592253_bin.4.fa.xml
ERR2592253_bin.6    https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592253_bin.6.fa.xml
ERR2592253_bin.9    https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592253_bin.9.fa.xml
ERR2592258_bin.2    https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592258_bin.2.fa.xml
ERR2592258_bin.21   https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592258_bin.21.fa.xml
ERR2592258_bin.3    https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592258_bin.3.fa.xml
ERR2592258_bin.5    https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592258_bin.5.fa.xml
ERR2592258_bin.56   https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592258_bin.56.fa.xml
ERR2592260_bin.16   https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592260_bin.16.fa.xml
ERR2592262_bin.5    https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592262_bin.5.fa.xml
ERR2592262_bin.6    https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592262_bin.6.fa.xml
ERR2592264_bin.1    https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592264_bin.1.fa.xml
ERR2592265_bin.11   https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592265_bin.11.fa.xml
ERR2592265_bin.13   https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592265_bin.13.fa.xml
ERR2592265_bin.7    https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592265_bin.7.fa.xml
ERR2592265_bin.9    https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592265_bin.9.fa.xml
ERR2592268_bin.23   https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592268_bin.23.fa.xml
ERR2592268_bin.38   https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592268_bin.38.fa.xml
ERR2592268_bin.45   https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592268_bin.45.fa.xml
ERR2592269_bin.12   https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592269_bin.12.fa.xml
ERR2592269_bin.19   https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592269_bin.19.fa.xml
ERR2592269_bin.4    https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592269_bin.4.fa.xml
ERR2592274_bin.18   https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592274_bin.18.fa.xml
ERR2592274_bin.3    https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592274_bin.3.fa.xml
ERR2592276_bin.23   https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592276_bin.23.fa.xml
ERR2592276_bin.28   https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592276_bin.28.fa.xml
ERR2592276_bin.5    https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/medium/cooccurrence/ERR2592276_bin.5.fa.xml

The following parameters can be configured:

• metabolicEdgeBatches: Batches of edges that are provided as input to SMETANA.

• metabolicEdgeReplicates: Number of replicates per edge that should be computed.

Output

• output_raw.graphml: Cooccurrence network unfiltered in graphml format

• output.graphml: Filtered cooccurrence network in graphml format

• edges_index.tsv: Edges of the graph

• edgeAttributes.tsv: Edge attributes of the graph containing metrics computed by SMETANA.

SPIEC-EASI

• stability.txt: Network stability estimation